Detailed information of SNP:



SNP ID: sf0405433324(Gbrowse)

Chromosome: chr04

Position: 5433324
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1362 78.56% 21.44%
All Indica753 89.38% 10.62%
All Japonica495 68.89% 31.11%
Aus63 26.98% 73.02%
Indica I372 93.28% 6.72%
Indica II187 77.01% 22.99%
Indica Intermediate194 93.81% 6.19%
Temperate Japonica335 63.88% 36.12%
Tropical Japonica93 69.89% 30.11%
Japonica Intermediate67 92.54% 7.46%
Group VI/Aromatic12 91.67% 8.33%
Intermediate39 71.79% 28.21%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0405433324 T->C LOC_Os04g10070(LOC_Os04g10070.1) INTRON