Detailed information of SNP:
|
SNP ID:
sf0405433324(Gbrowse)
Chromosome: chr04 Position: 5433324 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 78.56% | 21.44% |
| All Indica | 753 | 89.38% | 10.62% |
| All Japonica | 495 | 68.89% | 31.11% |
| Aus | 63 | 26.98% | 73.02% |
| Indica I | 372 | 93.28% | 6.72% |
| Indica II | 187 | 77.01% | 22.99% |
| Indica Intermediate | 194 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 63.88% | 36.12% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405433324 | T->C | LOC_Os04g10070(LOC_Os04g10070.1) | INTRON |