Detailed information of SNP:



SNP ID: sf0405438021(Gbrowse)

Chromosome: chr04

Position: 5438021
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1345 62.68% 37.32%
All Indica735 60.95% 39.05%
All Japonica495 68.28% 31.72%
Aus63 38.10% 61.90%
Indica I335 70.75% 29.25%
Indica II203 39.41% 60.59%
Indica Intermediate197 66.50% 33.50%
Temperate Japonica335 63.58% 36.42%
Tropical Japonica92 68.48% 31.52%
Japonica Intermediate68 91.18% 8.82%
Group VI/Aromatic14 64.29% 35.71%
Intermediate38 63.16% 36.84%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0405438021 A->C INTERGENIC None