Detailed information of SNP:
|
SNP ID:
sf0405438021(Gbrowse)
Chromosome: chr04 Position: 5438021 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1345 | 62.68% | 37.32% |
| All Indica | 735 | 60.95% | 39.05% |
| All Japonica | 495 | 68.28% | 31.72% |
| Aus | 63 | 38.10% | 61.90% |
| Indica I | 335 | 70.75% | 29.25% |
| Indica II | 203 | 39.41% | 60.59% |
| Indica Intermediate | 197 | 66.50% | 33.50% |
| Temperate Japonica | 335 | 63.58% | 36.42% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405438021 | A->C | INTERGENIC | None |