Detailed information of SNP:
|
SNP ID:
sf0405438798(Gbrowse)
Chromosome: chr04 Position: 5438798 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 91.24% | 8.76% |
| All Indica | 796 | 85.55% | 14.45% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 75.87% | 24.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405438798 | A->G | INTERGENIC | None |