Detailed information of SNP:
|
SNP ID:
sf0405439925(Gbrowse)
Chromosome: chr04 Position: 5439925 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1305 | 61.30% | 38.70% |
| All Indica | 690 | 60.14% | 39.86% |
| All Japonica | 495 | 66.06% | 33.94% |
| Aus | 64 | 42.19% | 57.81% |
| Indica I | 306 | 73.53% | 26.47% |
| Indica II | 189 | 35.45% | 64.55% |
| Indica Intermediate | 195 | 63.08% | 36.92% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405439925 | A->G | LOC_Os04g10080(LOC_Os04g10080.1) | Non-Synonymous SNP |