Detailed information of SNP:
|
SNP ID:
sf0405440732(Gbrowse)
Chromosome: chr04 Position: 5440732 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 89.53% | 10.47% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 492 | 72.76% | 27.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 66.87% | 33.13% |
| Tropical Japonica | 92 | 78.26% | 21.74% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405440732 | C->T | LOC_Os04g10080(LOC_Os04g10080.1) | Non-Synonymous SNP |