Detailed information of SNP:
|
SNP ID:
sf0405455408(Gbrowse)
Chromosome: chr04 Position: 5455408 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 59.31% | 40.69% |
| All Indica | 741 | 56.14% | 43.86% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 63 | 30.16% | 69.84% |
| Indica I | 340 | 62.06% | 37.94% |
| Indica II | 205 | 39.02% | 60.98% |
| Indica Intermediate | 196 | 63.78% | 36.22% |
| Temperate Japonica | 335 | 63.88% | 36.12% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405455408 | G->C | INTERGENIC | None |