Detailed information of SNP:
|
SNP ID:
sf0405458863(Gbrowse)
Chromosome: chr04 Position: 5458863 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1369 | 54.64% | 45.36% |
| All Indica | 753 | 65.87% | 34.13% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 344 | 63.08% | 36.92% |
| Indica II | 207 | 77.78% | 22.22% |
| Indica Intermediate | 202 | 58.42% | 41.58% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405458863 | G->T | INTERGENIC | None |