Detailed information of SNP:
|
SNP ID:
sf0405459204(Gbrowse)
Chromosome: chr04 Position: 5459204 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 50.67% | 49.33% |
| All Indica | 737 | 59.57% | 40.43% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 335 | 54.63% | 45.37% |
| Indica II | 202 | 74.75% | 25.25% |
| Indica Intermediate | 200 | 52.50% | 47.50% |
| Temperate Japonica | 335 | 36.12% | 63.88% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405459204 | T->A | INTERGENIC | None |