Detailed information of SNP:
|
SNP ID:
sf0405459457(Gbrowse)
Chromosome: chr04 Position: 5459457 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 90.32% | 9.68% |
| All Indica | 796 | 88.32% | 11.68% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 210 | 69.05% | 30.95% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405459457 | G->A | LOC_Os04g10120(LOC_Os04g10120.1) | Synonymous |