Detailed information of SNP:
|
SNP ID:
sf0405488726(Gbrowse)
Chromosome: chr04 Position: 5488726 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.01% | 39.99% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405488726 | A->G | INTERGENIC | None |