Detailed information of SNP:
|
SNP ID:
sf0405527013(Gbrowse)
Chromosome: chr04 Position: 5527013 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 59.03% | 40.97% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405527013 | C->G | INTERGENIC | None |