Detailed information of SNP:
|
SNP ID:
sf0405531138(Gbrowse)
Chromosome: chr04 Position: 5531138 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 73.43% | 26.57% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 40.64% | 59.36% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 37.23% | 62.77% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405531138 | A->T | LOC_Os04g10250(LOC_Os04g10250.1) | INTRON |