Detailed information of SNP:
|
SNP ID:
sf0405531698(Gbrowse)
Chromosome: chr04 Position: 5531698 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1250 | 54.24% | 45.76% |
| All Indica | 644 | 22.36% | 77.64% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 61 | 27.87% | 72.13% |
| Indica I | 295 | 16.61% | 83.39% |
| Indica II | 185 | 24.86% | 75.14% |
| Indica Intermediate | 164 | 29.88% | 70.12% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 10 | 0.00% | 100.00% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405531698 | C->T | LOC_Os04g10250(LOC_Os04g10250.1) | Synonymous |