Detailed information of SNP:
|
SNP ID:
sf0405534507(Gbrowse)
Chromosome: chr04 Position: 5534507 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1356 | 51.18% | 48.82% |
| All Indica | 772 | 64.64% | 35.36% |
| All Japonica | 464 | 34.48% | 65.52% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 366 | 87.70% | 12.30% |
| Indica II | 204 | 33.33% | 66.67% |
| Indica Intermediate | 202 | 54.46% | 45.54% |
| Temperate Japonica | 305 | 41.31% | 58.69% |
| Tropical Japonica | 91 | 32.97% | 67.03% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405534507 | G->T | INTERGENIC | None |