Detailed information of SNP:
|
SNP ID:
sf0405536034(Gbrowse)
Chromosome: chr04 Position: 5536034 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 78.94% | 21.06% |
| All Indica | 795 | 88.43% | 11.57% |
| All Japonica | 497 | 67.20% | 32.80% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 68.25% | 31.75% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405536034 | T->G | LOC_Os04g10260(LOC_Os04g10260.1) | INTRON |