Detailed information of SNP:
|
SNP ID:
sf0405554768(Gbrowse)
Chromosome: chr04 Position: 5554768 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 73.93% | 26.07% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 41.05% | 58.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405554768 | T->C | LOC_Os04g10290(LOC_Os04g10290.1) | INTRON |