Detailed information of SNP:
|
SNP ID:
sf0405566765(Gbrowse)
Chromosome: chr04 Position: 5566765 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 89.92% | 10.08% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 72.38% | 27.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 68.66% | 31.34% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405566765 | A->G | LOC_Os04g10320(LOC_Os04g10320.1) | INTRON |