Detailed information of SNP:
|
SNP ID:
sf0405584664(Gbrowse)
Chromosome: chr04 Position: 5584664 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 73.71% | 26.29% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 40.64% | 59.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 38.30% | 61.70% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405584664 | C->T | INTERGENIC | None |