Detailed information of SNP:
|
SNP ID:
sf0405594239(Gbrowse)
Chromosome: chr04 Position: 5594239 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 61.26% | 38.74% |
| All Indica | 794 | 93.32% | 6.68% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405594239 | T->C | LOC_Os04g10360(LOC_Os04g10360.1) | Synonymous |