Detailed information of SNP:
|
SNP ID:
sf0405594917(Gbrowse)
Chromosome: chr04 Position: 5594917 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.56% | 28.44% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 495 | 32.12% | 67.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 333 | 40.54% | 59.46% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405594917 | C->A | INTERGENIC | None |