Detailed information of SNP:
|
SNP ID:
sf0405599661(Gbrowse)
Chromosome: chr04 Position: 5599661 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 87.20% | 12.80% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 478 | 64.02% | 35.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 53.13% | 46.87% |
| Tropical Japonica | 76 | 84.21% | 15.79% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405599661 | C->A | INTERGENIC | None |