Detailed information of SNP:
|
SNP ID:
sf0405603956(Gbrowse)
Chromosome: chr04 Position: 5603956 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 75.05% | 24.95% |
| All Indica | 797 | 93.73% | 6.27% |
| All Japonica | 492 | 41.46% | 58.54% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 332 | 48.80% | 51.20% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405603956 | G->C | INTERGENIC | None |