Detailed information of SNP:
|
SNP ID:
sf0405614377(Gbrowse)
Chromosome: chr04 Position: 5614377 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1264 | 91.93% | 8.07% |
| All Indica | 774 | 99.87% | 0.13% |
| All Japonica | 373 | 73.73% | 26.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 100.00% | 0.00% |
| Indica II | 210 | 100.00% | 0.00% |
| Indica Intermediate | 194 | 99.48% | 0.52% |
| Temperate Japonica | 258 | 65.12% | 34.88% |
| Tropical Japonica | 75 | 100.00% | 0.00% |
| Japonica Intermediate | 40 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405614377 | A->G | LOC_Os04g10380(LOC_Os04g10380.1) | INTRON |