Detailed information of SNP:
|
SNP ID:
sf0405618200(Gbrowse)
Chromosome: chr04 Position: 5618200 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 96.85% | 3.15% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 477 | 91.19% | 8.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 321 | 88.16% | 11.84% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 93.75% | 6.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405618200 | G->C | LOC_Os04g10380(LOC_Os04g10380.1) | INTRON |