Detailed information of SNP:
|
SNP ID:
sf0405631622(Gbrowse)
Chromosome: chr04 Position: 5631622 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.17% | 25.83% |
| All Indica | 797 | 85.07% | 14.93% |
| All Japonica | 497 | 59.36% | 40.64% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 51.94% | 48.06% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405631622 | T->C | INTERGENIC | None |