Detailed information of SNP:
|
SNP ID:
sf0405647647(Gbrowse)
Chromosome: chr04 Position: 5647647 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.47% | 25.53% |
| All Indica | 798 | 93.11% | 6.89% |
| All Japonica | 497 | 41.25% | 58.75% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 48.06% | 51.94% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405647647 | T->G | INTERGENIC | None |