Detailed information of SNP:
|
SNP ID:
sf0405658194(Gbrowse)
Chromosome: chr04 Position: 5658194 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.46% | 24.54% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 497 | 41.65% | 58.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405658194 | A->G | LOC_Os04g10420(LOC_Os04g10420.1) | INTRON |