Detailed information of SNP:



SNP ID: sf0405663433(Gbrowse)

Chromosome: chr04

Position: 5663433
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 72.92% 27.08%
All Indica799 93.24% 6.76%
All Japonica497 36.62% 63.38%
Aus67 100.00% 0.00%
Indica I375 96.53% 3.47%
Indica II213 94.84% 5.16%
Indica Intermediate211 85.78% 14.22%
Temperate Japonica335 41.19% 58.81%
Tropical Japonica94 40.43% 59.57%
Japonica Intermediate68 8.82% 91.18%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0405663433 T->C INTERGENIC None