Detailed information of SNP:
|
SNP ID:
sf0405664776(Gbrowse)
Chromosome: chr04 Position: 5664776 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 72.69% | 27.31% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 496 | 36.49% | 63.51% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 334 | 41.32% | 58.68% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405664776 | T->C | LOC_Os04g10434(LOC_Os04g10434.1) | UTR_5_PRIME |