Detailed information of SNP:
|
SNP ID:
sf0405678155(Gbrowse)
Chromosome: chr04 Position: 5678155 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 74.28% | 25.72% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 58.35% | 41.65% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 52.24% | 47.76% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405678155 | T->C | INTERGENIC | None |