Detailed information of SNP:
|
SNP ID:
sf0405689984(Gbrowse)
Chromosome: chr04 Position: 5689984 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 69.52% | 30.48% |
| All Indica | 774 | 56.98% | 43.02% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 360 | 69.44% | 30.56% |
| Indica II | 207 | 35.27% | 64.73% |
| Indica Intermediate | 207 | 57.00% | 43.00% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405689984 | C->T | INTERGENIC | None |