Detailed information of SNP:
|
SNP ID:
sf0405703933(Gbrowse)
Chromosome: chr04 Position: 5703933 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 86.07% | 13.93% |
| All Indica | 795 | 83.77% | 16.23% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 66 | 57.58% | 42.42% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 55.92% | 44.08% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405703933 | A->G | INTERGENIC | None |