Detailed information of SNP:
|
SNP ID:
sf0405704104(Gbrowse)
Chromosome: chr04 Position: 5704104 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 86.30% | 13.70% |
| All Indica | 794 | 83.75% | 16.25% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 63 | 60.32% | 39.68% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 55.66% | 44.34% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405704104 | A->C | INTERGENIC | None |