Detailed information of SNP:
|
SNP ID:
sf0405704448(Gbrowse)
Chromosome: chr04 Position: 5704448 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 83.90% | 16.10% |
| All Indica | 796 | 84.05% | 15.95% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 211 | 55.92% | 44.08% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405704448 | A->G | INTERGENIC | None |