Detailed information of SNP:
|
SNP ID:
sf0405706316(Gbrowse)
Chromosome: chr04 Position: 5706316 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.34% | 26.66% |
| All Indica | 798 | 83.58% | 16.42% |
| All Japonica | 497 | 59.15% | 40.85% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 54.93% | 45.07% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 52.84% | 47.16% |
| Tropical Japonica | 94 | 58.51% | 41.49% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405706316 | C->T | INTERGENIC | None |