Detailed information of SNP:
|
SNP ID:
sf0405722825(Gbrowse)
Chromosome: chr04 Position: 5722825 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 60.23% | 39.77% |
| All Indica | 793 | 90.67% | 9.33% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 209 | 86.12% | 13.88% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405722825 | C->T | INTERGENIC | None |