Detailed information of SNP:
|
SNP ID:
sf0405723364(Gbrowse)
Chromosome: chr04 Position: 5723364 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 63.77% | 36.23% |
| All Indica | 787 | 80.94% | 19.06% |
| All Japonica | 496 | 37.70% | 62.30% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 204 | 58.82% | 41.18% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 334 | 41.62% | 58.38% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405723364 | T->A | INTERGENIC | None |