Detailed information of SNP:
SNP ID:
sf0405730910(Gbrowse)
Chromosome: chr04 Position: 5730910 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 84.64% | 15.36% |
All Indica | 799 | 88.86% | 11.14% |
All Japonica | 497 | 79.07% | 20.93% |
Aus | 67 | 73.13% | 26.87% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 69.01% | 30.99% |
Indica Intermediate | 211 | 89.57% | 10.43% |
Temperate Japonica | 335 | 70.45% | 29.55% |
Tropical Japonica | 94 | 97.87% | 2.13% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0405730910 | C->T | INTERGENIC | None |