Detailed information of SNP:



SNP ID: sf0405730910(Gbrowse)

Chromosome: chr04

Position: 5730910
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 84.64% 15.36%
All Indica799 88.86% 11.14%
All Japonica497 79.07% 20.93%
Aus67 73.13% 26.87%
Indica I375 99.73% 0.27%
Indica II213 69.01% 30.99%
Indica Intermediate211 89.57% 10.43%
Temperate Japonica335 70.45% 29.55%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0405730910 C->T INTERGENIC None