Detailed information of SNP:
|
SNP ID:
sf0405731432(Gbrowse)
Chromosome: chr04 Position: 5731432 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 80.76% | 19.24% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 68.01% | 31.99% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 66.27% | 33.73% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405731432 | G->A | INTERGENIC | None |