Detailed information of SNP:
|
SNP ID:
sf0405733205(Gbrowse)
Chromosome: chr04 Position: 5733205 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.14% | 15.86% |
| All Indica | 799 | 88.61% | 11.39% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 70.45% | 29.55% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405733205 | G->A | INTERGENIC | None |