Detailed information of SNP:
|
SNP ID:
sf0405736334(Gbrowse)
Chromosome: chr04 Position: 5736334 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1357 | 96.90% | 3.10% |
| All Indica | 751 | 95.74% | 4.26% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 57 | 92.98% | 7.02% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 177 | 89.83% | 10.17% |
| Indica Intermediate | 199 | 95.98% | 4.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405736334 | T->C | LOC_Os04g10569(LOC_Os04g10569.1) | INTRON |