Detailed information of SNP:
|
SNP ID:
sf0405771941(Gbrowse)
Chromosome: chr04 Position: 5771941 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 83.32% | 16.68% |
| All Indica | 796 | 96.73% | 3.27% |
| All Japonica | 485 | 58.35% | 41.65% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 330 | 55.45% | 44.55% |
| Tropical Japonica | 90 | 83.33% | 16.67% |
| Japonica Intermediate | 65 | 38.46% | 61.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405771941 | G->A | LOC_Os04g10630(LOC_Os04g10630.1) | INTRON |