Detailed information of SNP:
|
SNP ID:
sf0405773057(Gbrowse)
Chromosome: chr04 Position: 5773057 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 69.75% | 30.25% |
| All Indica | 798 | 81.08% | 18.92% |
| All Japonica | 497 | 63.78% | 36.22% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 60.60% | 39.40% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405773057 | T->C | LOC_Os04g10630(LOC_Os04g10630.1) | INTRON |