Detailed information of SNP:
|
SNP ID:
sf0405780775(Gbrowse)
Chromosome: chr04 Position: 5780775 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 52.13% | 47.87% |
| All Indica | 767 | 71.32% | 28.68% |
| All Japonica | 495 | 32.93% | 67.07% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 370 | 84.05% | 15.95% |
| Indica II | 207 | 56.04% | 43.96% |
| Indica Intermediate | 190 | 63.16% | 36.84% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 26.19% | 73.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405780775 | G->A | INTERGENIC | None |