Detailed information of SNP:
|
SNP ID:
sf0405792425(Gbrowse)
Chromosome: chr04 Position: 5792425 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 54.60% | 45.40% |
| All Indica | 788 | 34.01% | 65.99% |
| All Japonica | 489 | 92.84% | 7.16% |
| Aus | 58 | 20.69% | 79.31% |
| Indica I | 368 | 19.02% | 80.98% |
| Indica II | 211 | 43.60% | 56.40% |
| Indica Intermediate | 209 | 50.72% | 49.28% |
| Temperate Japonica | 331 | 98.79% | 1.21% |
| Tropical Japonica | 91 | 71.43% | 28.57% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405792425 | G->A | INTERGENIC | None |