Detailed information of SNP:
|
SNP ID:
sf0405827306(Gbrowse)
Chromosome: chr04 Position: 5827306 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 88.85% | 11.15% |
| All Indica | 789 | 86.44% | 13.56% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 368 | 89.67% | 10.33% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405827306 | A->C | LOC_Os04g10730(LOC_Os04g10730.1) | Non-Synonymous SNP |