Detailed information of SNP:
|
SNP ID:
sf0405827586(Gbrowse)
Chromosome: chr04 Position: 5827586 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 89.55% | 10.45% |
| All Indica | 788 | 87.56% | 12.44% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 370 | 90.27% | 9.73% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 206 | 77.18% | 22.82% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405827586 | A->G | LOC_Os04g10730(LOC_Os04g10730.1) | INTRON |