Detailed information of SNP:
|
SNP ID:
sf0405827590(Gbrowse)
Chromosome: chr04 Position: 5827590 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 88.00% | 12.00% |
| All Indica | 774 | 85.40% | 14.60% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 366 | 89.07% | 10.93% |
| Indica II | 205 | 87.32% | 12.68% |
| Indica Intermediate | 203 | 76.85% | 23.15% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405827590 | G->A | LOC_Os04g10730(LOC_Os04g10730.1) | INTRON |