Detailed information of SNP:
|
SNP ID:
sf0405827596(Gbrowse)
Chromosome: chr04 Position: 5827596 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 90.60% | 9.40% |
| All Indica | 776 | 89.56% | 10.44% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 368 | 92.66% | 7.34% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 200 | 79.50% | 20.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405827596 | G->A | LOC_Os04g10730(LOC_Os04g10730.1) | INTRON |