Detailed information of SNP:
|
SNP ID:
sf0405827936(Gbrowse)
Chromosome: chr04 Position: 5827936 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 90.46% | 9.54% |
| All Indica | 792 | 97.22% | 2.78% |
| All Japonica | 492 | 78.46% | 21.54% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 334 | 69.76% | 30.24% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0405827936 | G->A | LOC_Os04g10730(LOC_Os04g10730.1) | INTRON |